Transcript: lnc-GRHL2-7:6

Basic information

LNCipedia transcript ID: lnc-GRHL2-7:6 
LNCipedia gene ID: lnc-GRHL2-7
Ensembl Gene ID: ENSG00000253737
Ensembl Transcript ID: ENST00000518090
Location (hg19): chr8:102151893-102153157
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518090; ENST00000518090.1; KB-1460A1.3-001; OTTHUMT00000380469.1; NONHSAT128039
Alternative gene names: ENSG00000253737; KB-1460A1.3; ENSG00000253737.1; OTTHUMG00000164822.1; AP003469.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.2878 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRHL2-7:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRHL2-5:1
3.1 lnc-GRHL2-6:1
4.0 lnc-GRHL2-7:6
4.1 lnc-GRHL2-7:6
5.0 lnc-GRHL2-7:6
5.1 lnc-CA2-173:6
5.2 lnc-GRHL2-7:6