Transcript: lnc-GRHL3-1:3

Basic information

LNCipedia transcript ID: lnc-GRHL3-1:3 
LNCipedia gene ID: lnc-GRHL3-1
RefSeq ID: NR_027087
Location (hg19): chr1:24526730-24538180
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1846 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000004; NR_027087; NR_027087.2
Alternative gene names: XLOC_000098; linc-GRHL3-1; LOC284632


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.2022 non-coding 
CPAT coding probability 6.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRHL3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRHL3-1:2
3.1 lnc-GRHL3-1:3
4.0 lnc-GRHL3-1:3
4.1 lnc-GRHL3-1:3
5.0 lnc-GRHL3-1:3
5.1 lnc-GRHL3-7:2
5.2 lnc-GRHL3-1:3