Transcript: lnc-GRID1-2:1

Basic information

LNCipedia transcript ID: lnc-GRID1-2:1 
LNCipedia gene ID: lnc-GRID1-2
Ensembl Gene ID: ENSG00000223993
Ensembl Transcript ID: ENST00000444137
Location (hg19): chr10:87191699-87192271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018013; ENST00000444137; ENST00000444137.1; RP11-475D12.1-001; OTTHUMT00000049142.1; NONHSAT015340
Alternative gene names: XLOC_008881; linc-LRIT1-3; ENSG00000223993; RP11-475D12.1; ENSG00000223993.1; OTTHUMG00000018645.1; AC025428.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -230.255 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRID1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRID1-2:1
3.1 lnc-GRID1-2:1
4.0 lnc-GRID1-2:1
4.1 lnc-GRID1-2:1
5.0 lnc-GRID1-2:1
5.1 lnc-HTR7-58:2
5.2 lnc-GRID1-2:1