Transcript: lnc-GRIN2A-2:1

Basic information

LNCipedia transcript ID: lnc-GRIN2A-2:1 
LNCipedia gene ID: lnc-GRIN2A-2
Ensembl Gene ID: ENSG00000260756
Ensembl Transcript ID: ENST00000569215
Location (hg19): chr16:10445297-10446609
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1313 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569215.1; RP11-609N14.1-001; OTTHUMT00000435269.1
Alternative gene names: ENSG00000260756.1; RP11-609N14.1; OTTHUMG00000177090.1; AC131649.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.7728 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRIN2A-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRIN2A-2:1
4.0 lnc-GRIN2A-2:1
4.1 lnc-GRIN2A-2:1
5.0 lnc-GRIN2A-2:1
5.1 lnc-PARN-83:2
5.2 lnc-GRIN2A-2:1