Transcript: lnc-GRIP2-4:8

Basic information

LNCipedia transcript ID: lnc-GRIP2-4:8 
LNCipedia gene ID: lnc-GRIP2-4
Ensembl Gene ID: ENSG00000235629
Ensembl Transcript ID: ENST00000424242
Location (hg19): chr3:14689701-14690939
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005746; ENST00000424242.1; AC090952.5-001; OTTHUMT00000340597.1; NONHSAT088356
Alternative gene names: XLOC_003057; linc-GRIP2-3; ENSG00000235629.1; AC090952.5; OTTHUMG00000155547.1; AC090952.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.1736 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRIP2-4:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS25-1:1
3.1 lnc-MRPS25-4:1
4.0 lnc-MRPS25-4:1
4.1 lnc-MRPS25-4:1
5.0 lnc-MRPS25-4:1
5.1 lnc-SH3BP5-22:8
5.2 lnc-GRIP2-4:8