Transcript: lnc-GRM1-12:1

Basic information

LNCipedia transcript ID: lnc-GRM1-12:1 
LNCipedia gene ID: lnc-GRM1-12
Ensembl Gene ID: ENSG00000270638
Ensembl Transcript ID: ENST00000603994
Location (hg19): chr6:146056706-146058354
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1649 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT115398; ENST00000603994.1
Alternative gene names: ENSG00000270638.1; RP3-466P17.1; AL023806.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.696 non-coding 
CPAT coding probability 3.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRM1-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRM1-11:1
4.0 lnc-GRM1-11:1
4.1 lnc-GRM1-1:23
5.0 lnc-GRM1-1:23
5.1 lnc-ADGB-29:1
5.2 lnc-GRM1-12:1