Transcript: lnc-GRXCR1-1:1

Basic information

LNCipedia transcript ID: lnc-GRXCR1-1:1 
LNCipedia gene ID: lnc-GRXCR1-1
Ensembl Gene ID: ENSG00000251517
Ensembl Transcript ID: ENST00000511279
Location (hg19): chr4:42708124-42709352
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1128 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007521; ENST00000511279; ENST00000511279.1; RP11-109E24.1-001; OTTHUMT00000363529.1; NONHSAT096202
Alternative gene names: XLOC_003524; linc-GRXCR1; ENSG00000251517; RP11-109E24.1; ENSG00000251517.1; OTTHUMG00000161042.1; AC096734.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.6702 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRXCR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRXCR1-1:1
3.1 lnc-GRXCR1-1:1
4.0 lnc-GRXCR1-1:1
4.1 lnc-GRXCR1-1:1
5.0 lnc-GRXCR1-1:1
5.1 lnc-GABRB1-21:1
5.2 lnc-GRXCR1-1:1