Transcript: lnc-GSG1L2-1:2

Basic information

LNCipedia transcript ID: lnc-GSG1L2-1:2 
LNCipedia gene ID: lnc-GSG1L2-1
Location (hg19): chr17:9726018-9727777
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1760 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000575003.1; RP11-655D3.2-001; OTTHUMT00000440120.1; NONHSAT145599
Alternative gene names: ENSG00000262144.1; RP11-655D3.2; OTTHUMG00000177986.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2342 non-coding 
CPAT coding probability 3.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GSG1L2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC027045.1-1:1
4.0 lnc-AC027045.1-1:1
4.1 lnc-AC027045.1-1:1
5.0 lnc-AC027045.1-1:1
5.1 lnc-GSG1L2-1:1
5.2 lnc-GSG1L2-1:2