Transcript: lnc-GTDC1-27:5

Basic information

LNCipedia transcript ID: lnc-GTDC1-27:5 
LNCipedia gene ID: lnc-GTDC1-27
Location (hg19): chr2:144660226-144661212
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 987 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257277.1|FTMT20600008912.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -101.5795 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTDC1-27:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GTDC1-2:5
5.0 lnc-GTDC1-2:5
5.1 lnc-MMADHC-91:5
5.2 lnc-GTDC1-27:5