Transcript: lnc-GTDC1-5:3

Basic information

LNCipedia transcript ID: lnc-GTDC1-5:3 
LNCipedia gene ID: lnc-GTDC1-5
Ensembl Gene ID: ENSG00000228655
Ensembl Transcript ID: ENST00000442794
Location (hg19): chr2:144072003-144238350
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 561 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442794.1; AC096558.1-001; OTTHUMT00000333093.1; NONHSAT074733
Alternative gene names: ENSG00000228655.2; AC096558.1; OTTHUMG00000153939.2; ENSG00000228655.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.3905 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTDC1-5:3 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTDC1-5:3
4.0 lnc-GTDC1-5:3
4.1 lnc-GTDC1-5:3
5.0 lnc-GTDC1-5:3
5.1 lnc-MMADHC-97:3
5.2 lnc-GTDC1-5:3