Transcript: lnc-GTF2B-15:4

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:4 
HGNC Gene Symbol: lnc-GTF2B-15    
HGNC Full Gene Name: PKN2 antisense RNA 1
Ensembl Gene ID: ENSG00000237505
Ensembl Transcript ID: ENST00000645890
Location (hg19): chr1:88978813-89150628
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2593 bp
Exons: 7
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000645890.1
Alternative gene names: ENSG00000237505.7; PKN2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -102.5189 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-RBMXL1-15:4
5.1 lnc-RBMXL1-15:4
5.2 lnc-GTF2B-15:4