Transcript: lnc-GTF2H5-24:1

Basic information

LNCipedia transcript ID: lnc-GTF2H5-24:1 
LNCipedia gene ID: lnc-GTF2H5-24
Location (hg19): chr6:158703295-158733390
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 424 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00011401; ENST00000432358; ENST00000432358.1; RP11-732M18.3-001; OTTHUMT00000042868.1
Alternative gene names: XLOC_005517; linc-TULP4; ENSG00000236537; RP11-732M18.3; ENSG00000236537.1; OTTHUMG00000015909.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.1049 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2H5-24:1 yes no no no

Available literature

  1. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TULP4-1:1
3.1 lnc-TULP4-1:1
4.0 lnc-TULP4-1:1
4.1 lnc-TULP4-1:1
5.0 lnc-TULP4-1:1
5.1 lnc-GTF2H5-3:1
5.2 lnc-GTF2H5-24:1