Transcript: lnc-GTF2IRD2-1:12

Basic information

LNCipedia transcript ID: lnc-GTF2IRD2-1:12 
LNCipedia gene ID: lnc-GTF2IRD2-1
Ensembl Gene ID: ENSG00000232729
Ensembl Transcript ID: ENST00000450426
Location (hg19): chr7:74103273-74143103
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 686 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450426.2; AC083884.8-001; OTTHUMT00000343535.2; NONHSAT121472; ENST00000450426.6
Alternative gene names: ENSG00000232729.2; AC083884.8; OTTHUMG00000156239.3; ENSG00000232729.3; ENSG00000232729.7; AC211433.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 263.3005 coding 
CPAT coding probability 36.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GTF2IRD2-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2IRD2-1:2
4.0 lnc-STAG3L2-1:7
4.1 lnc-STAG3L2-1:7
5.0 lnc-STAG3L2-1:7
5.1 lnc-TRIM74-28:5
5.2 lnc-GTF2IRD2-1:12