Transcript: lnc-GTF2IRD2-1:9

Basic information

LNCipedia transcript ID: lnc-GTF2IRD2-1:9 
LNCipedia gene ID: lnc-GTF2IRD2-1
RefSeq ID: NR_110044
Location (hg19): chr7:74103271-74143256
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 841 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110044; NR_110044.1
Alternative gene names: LOC101926943


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 263.3005 coding 
CPAT coding probability 36.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GTF2IRD2-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2IRD2-1:4
4.0 lnc-STAG3L2-1:4
4.1 lnc-STAG3L2-1:4
5.0 lnc-STAG3L2-1:4
5.1 lnc-TRIM74-28:2
5.2 lnc-GTF2IRD2-1:9