Transcript: lnc-GTPBP4-3:1

Basic information

LNCipedia transcript ID: lnc-GTPBP4-3:1 
LNCipedia gene ID: lnc-GTPBP4-3
Ensembl Gene ID: ENSG00000229869
Ensembl Transcript ID: ENST00000435531
RefSeq ID: NR_120629
Location (hg19): chr10:978966-988683
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000435531.1; RP11-363N22.2-001; OTTHUMT00000046393.1; NONHSAT010882; NR_120629; NR_120629.1
Alternative gene names: ENSG00000229869.1; RP11-363N22.2; OTTHUMG00000017533.1; AL359878.2; LOC101927762


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.2948 non-coding 
CPAT coding probability 22.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTPBP4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTPBP4-3:1
4.0 lnc-GTPBP4-3:1
4.1 lnc-GTPBP4-3:1
5.0 lnc-GTPBP4-3:1
5.1 lnc-NPY4R2-551:10
5.2 lnc-GTPBP4-3:1