Transcript: lnc-GTPBP4-3:12

Basic information

LNCipedia transcript ID: lnc-GTPBP4-3:12 
LNCipedia gene ID: lnc-GTPBP4-3
Location (hg19): chr10:995367-998124
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 662 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018082; NONHSAT010886
Alternative gene names: XLOC_008337; linc-GTPBP4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.6677 non-coding 
CPAT coding probability 9.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTPBP4-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTPBP4-1:1
3.1 lnc-GTPBP4-2:1
4.0 lnc-GTPBP4-2:1
4.1 lnc-GTPBP4-3:12
5.0 lnc-GTPBP4-3:12
5.1 lnc-NPY4R2-551:12
5.2 lnc-GTPBP4-3:12