Transcript: lnc-GUF1-1:1

Basic information

LNCipedia transcript ID: lnc-GUF1-1:1 
LNCipedia gene ID: lnc-GUF1-1
Ensembl Gene ID: ENSG00000248744
Ensembl Transcript ID: ENST00000515623
Location (hg19): chr4:45011557-45053669
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 672 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515623; ENST00000515623.1; RP11-362I1.1-001; OTTHUMT00000367743.1; NONHSAT096233
Alternative gene names: ENSG00000248744; RP11-362I1.1; ENSG00000248744.1; OTTHUMG00000160568.2; AC108467.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.6755 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GUF1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GUF1-1:1
3.1 lnc-GUF1-1:1
4.0 lnc-GUF1-1:1
4.1 lnc-GUF1-1:1
5.0 lnc-GUF1-1:1
5.1 lnc-GABRB1-8:1
5.2 lnc-GUF1-1:1