Transcript: lnc-H2AFJ-2:1

Basic information

LNCipedia transcript ID: lnc-H2AFJ-2:1 
LNCipedia gene ID: lnc-H2AFJ-2
Ensembl Gene ID: ENSG00000214772
Ensembl Transcript ID: ENST00000501178
Location (hg19): chr12:14818589-14910897
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 657 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501178.2; RP11-174G6.1-001; OTTHUMT00000400838.1; NONHSAT027076
Alternative gene names: ENSG00000214772.2; RP11-174G6.1; OTTHUMG00000168734.1; AC010168.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.9595 non-coding 
CPAT coding probability 5.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-H2AFJ-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-H2AFJ-2:1
4.0 lnc-H2AFJ-2:1
4.1 lnc-H2AFJ-2:1
5.0 lnc-H2AFJ-2:1
5.1 lnc-BCL2L14-58:6
5.2 lnc-H2AFJ-2:1