Transcript: lnc-H2AFJ-2:2

Basic information

LNCipedia transcript ID: lnc-H2AFJ-2:2 
LNCipedia gene ID: lnc-H2AFJ-2
Location (hg19): chr12:14818570-14825246
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 425 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000214772.2|FTMT24700042115.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -116.6668 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-H2AFJ-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-H2AFJ-2:2
5.0 lnc-H2AFJ-2:2
5.1 lnc-BCL2L14-58:1
5.2 lnc-H2AFJ-2:2