Transcript: lnc-HAND1-1:2

Basic information

LNCipedia transcript ID: lnc-HAND1-1:2 
LNCipedia gene ID: lnc-HAND1-1
Ensembl Gene ID: ENSG00000254293
Ensembl Transcript ID: ENST00000518984
Location (hg19): chr5:153863477-153865489
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1734 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518984; ENST00000518984.1; CTB-158E9.1-001; OTTHUMT00000374485.1
Alternative gene names: ENSG00000254293; CTB-158E9.1; ENSG00000254293.1; OTTHUMG00000163601.1; AC026688.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.496 non-coding 
CPAT coding probability 46.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HAND1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAND1-1:2
3.1 lnc-HAND1-1:2
4.0 lnc-HAND1-1:2
4.1 lnc-HAND1-1:2
5.0 lnc-HAND1-1:2
5.1 lnc-FAXDC2-8:2
5.2 lnc-HAND1-1:2