Transcript: lnc-HAO2-2:5

Basic information

LNCipedia transcript ID: lnc-HAO2-2:5 
LNCipedia gene ID: lnc-HAO2-2
Ensembl Gene ID: ENSG00000231365
Ensembl Transcript ID: ENST00000418015
Location (hg19): chr1:119683353-119818596
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1529 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418015.1; RP11-418J17.1-001; OTTHUMT00000034375.1
Alternative gene names: ENSG00000231365.1; RP11-418J17.1; OTTHUMG00000012342.1; ENSG00000231365.5; AL359915.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.4288 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HAO2-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HAO2-2:5
4.0 lnc-HAO2-2:5
4.1 lnc-HAO2-2:5
5.0 lnc-HAO2-2:5
5.1 lnc-HAO2-2:5
5.2 lnc-HAO2-2:5