Transcript: lnc-HARS-6:2

Basic information

LNCipedia transcript ID: lnc-HARS-6:2 
LNCipedia gene ID: lnc-HARS-6
Ensembl Gene ID: ENSG00000279726
Ensembl Transcript ID: ENST00000624712
Location (hg19): chr5:140168042-140201778
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1053 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624712.1
Alternative gene names: ENSG00000279726.1; AC005609.16; AC005609.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 193.9209 coding 
CPAT coding probability 67.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HARS-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC005609.1-1:2
4.1 lnc-AC005609.1-1:2
5.0 lnc-AC005609.1-1:2
5.1 lnc-DND1-14:2
5.2 lnc-HARS-6:2