Transcript: lnc-HARS-6:3

Basic information

LNCipedia transcript ID: lnc-HARS-6:3 
LNCipedia gene ID: lnc-HARS-6
Ensembl Gene ID: ENSG00000279726
Ensembl Transcript ID: ENST00000624176
Location (hg19): chr5:140168397-140181150
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 513 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624176.1
Alternative gene names: ENSG00000279726.1; AC005609.16; AC005609.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 159.4329 coding 
CPAT coding probability 93.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HARS-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC005609.1-1:3
4.1 lnc-AC005609.1-1:3
5.0 lnc-AC005609.1-1:3
5.1 lnc-DND1-14:3
5.2 lnc-HARS-6:3