Transcript: lnc-HAS2-2:1

Basic information

LNCipedia transcript ID: lnc-HAS2-2:1 
LNCipedia gene ID: lnc-HAS2-2
Ensembl Gene ID: ENSG00000254209
Ensembl Transcript ID: ENST00000518922
Location (hg19): chr8:122684013-122696802
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518922; ENST00000518922.1; RP11-3G20.1-001; OTTHUMT00000381151.1; NONHSAT128472
Alternative gene names: ENSG00000254209; RP11-3G20.1; ENSG00000254209.1; OTTHUMG00000164954.1; AC104233.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.8819 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HAS2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAS2-2:1
3.1 lnc-HAS2-2:1
4.0 lnc-HAS2-2:1
4.1 lnc-HAS2-2:1
5.0 lnc-HAS2-2:1
5.1 lnc-ENPP2-10:1
5.2 lnc-HAS2-2:1