Transcript: lnc-HDAC2-4:4

Basic information

LNCipedia transcript ID: lnc-HDAC2-4:4 
LNCipedia gene ID: lnc-HDAC2-4
Location (hg19): chr6:113678221-113680040
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 325 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012252; NONHSAT114540
Alternative gene names: XLOC_005808; linc-LAMA4-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.858 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDAC2-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC2-4:4
3.1 lnc-HDAC2-4:4
4.0 lnc-HDAC2-4:4
4.1 lnc-HDAC2-4:4
5.0 lnc-HDAC2-4:4
5.1 lnc-HDAC2-4:4
5.2 lnc-HDAC2-4:4