Transcript: lnc-HDAC2-6:1

Basic information

LNCipedia transcript ID: lnc-HDAC2-6:1 
LNCipedia gene ID: lnc-HDAC2-6
Ensembl Gene ID: ENSG00000231912
Ensembl Transcript ID: ENST00000456424
Location (hg19): chr6:114113032-114158556
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 375 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456424.2
Alternative gene names: ENSG00000231912.2; RP1-249H1.2; FO393415.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.7116 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDAC2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDAC2-6:1
4.0 lnc-HDAC2-6:1
4.1 lnc-HDAC2-6:1
5.0 lnc-HDAC2-6:1
5.1 lnc-HDAC2-6:1
5.2 lnc-HDAC2-6:1