Transcript: lnc-HDAC9-1:1

Basic information

LNCipedia transcript ID: lnc-HDAC9-1:1 
LNCipedia gene ID: lnc-HDAC9-1
Location (hg19): chr7:19037466-19042039
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4574 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000564613.1; GS1-465N13.1-001; OTTHUMT00000422926.1; NONHSAT119371
Alternative gene names: ENSG00000260214.1; GS1-465N13.1; OTTHUMG00000173376.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.1527 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDAC9-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDAC9-1:1
4.0 lnc-HDAC9-1:1
4.1 lnc-HDAC9-1:1
5.0 lnc-HDAC9-1:1
5.1 lnc-AHR-14:1
5.2 lnc-HDAC9-1:1