Transcript: lnc-HDDC2-2:4

Basic information

LNCipedia transcript ID: lnc-HDDC2-2:4 
LNCipedia gene ID: lnc-HDDC2-2
Ensembl Gene ID: ENSG00000226409
Ensembl Transcript ID: ENST00000422227
Location (hg19): chr6:125691180-125766327
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1155 bp
Exons: 4
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422227.2
Alternative gene names: ENSG00000226409.2; AL450332.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -125.1655 non-coding 
CPAT coding probability 17.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-HDDC2-2:4
5.1 lnc-HDDC2-2:4
5.2 lnc-HDDC2-2:4