Transcript: lnc-HDDC2-5:2

Basic information

LNCipedia transcript ID: lnc-HDDC2-5:2 
LNCipedia gene ID: lnc-HDDC2-5
Location (hg19): chr6:126041489-126070332
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 524 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000432121; ENST00000432121.1; RP11-624M8.1-003; OTTHUMT00000042076.1; NONHSAT114809
Alternative gene names: ENSG00000237742; RP11-624M8.1; ENSG00000237742.1; OTTHUMG00000015511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.2408 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDDC2-4:1
3.1 lnc-HDDC2-5:2
4.0 lnc-HDDC2-5:2
4.1 lnc-HDDC2-5:2
5.0 lnc-HDDC2-5:2
5.1 lnc-HDDC2-5:2
5.2 lnc-HDDC2-5:2