Transcript: lnc-HDDC3-7:1

Basic information

LNCipedia transcript ID: lnc-HDDC3-7:1 
LNCipedia gene ID: lnc-HDDC3-7
Ensembl Gene ID: ENSG00000259212
Ensembl Transcript ID: ENST00000558389
Location (hg19): chr15:91139072-91139679
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 474 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558389.1; CTD-3065B20.2-001; OTTHUMT00000417935.1; NONHSAT048401
Alternative gene names: ENSG00000259212.1; CTD-3065B20.2; OTTHUMG00000172333.1; AC103739.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.7339 non-coding 
CPAT coding probability 4.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABARAPL3-3:1
4.0 lnc-GABARAPL3-3:1
4.1 lnc-GABARAPL3-3:1
5.0 lnc-GABARAPL3-3:1
5.1 lnc-CIB1-7:1
5.2 lnc-HDDC3-7:1