Transcript: lnc-HDGFL1-2:10

Basic information

LNCipedia transcript ID: lnc-HDGFL1-2:10 
LNCipedia gene ID: lnc-HDGFL1-2
Location (hg19): chr6:23399272-23404250
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 238 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011736; NONHSAT108097
Alternative gene names: XLOC_005202; linc-NRSN1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -303.4005 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDGFL1-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRSN1-2:2
3.1 lnc-NRSN1-2:2
4.0 lnc-NRSN1-2:2
4.1 lnc-HDGFL1-2:10
5.0 lnc-HDGFL1-2:10
5.1 lnc-GMNN-24:8
5.2 lnc-HDGFL1-2:10