Transcript: lnc-HDGFL1-2:11

Basic information

LNCipedia transcript ID: lnc-HDGFL1-2:11 
LNCipedia gene ID: lnc-HDGFL1-2
Location (hg19): chr6:23416372-23455725
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 988 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011737; NONHSAT108098
Alternative gene names: XLOC_005203; linc-NRSN1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.0718 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDGFL1-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRSN1-1:1
3.1 lnc-NRSN1-1:1
4.0 lnc-NRSN1-1:1
4.1 lnc-HDGFL1-2:11
5.0 lnc-HDGFL1-2:11
5.1 lnc-GMNN-24:9
5.2 lnc-HDGFL1-2:11