Transcript: lnc-HDGFL1-5:2

Basic information

LNCipedia transcript ID: lnc-HDGFL1-5:2 
LNCipedia gene ID: lnc-HDGFL1-5
Location (hg19): chr6:23337939-23346788
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT108090; FPKM1_group_27336_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -366.8495 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDGFL1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDGFL1-5:2
4.0 lnc-HDGFL1-5:2
4.1 lnc-HDGFL1-5:2
5.0 lnc-HDGFL1-5:2
5.1 lnc-GMNN-23:2
5.2 lnc-HDGFL1-5:2