Transcript: lnc-HEMGN-1:1

Basic information

LNCipedia transcript ID: lnc-HEMGN-1:1 
LNCipedia gene ID: lnc-HEMGN-1
Ensembl Gene ID: ENSG00000236896
Ensembl Transcript ID: ENST00000411981
Location (hg19): chr9:100748833-100749938
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 402 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411981.1; RP11-535C21.3-001; OTTHUMT00000053345.1; NONHSAT133543
Alternative gene names: ENSG00000236896.1; RP11-535C21.3; OTTHUMG00000020337.1; AL354726.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.7196 non-coding 
CPAT coding probability 5.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HEMGN-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HEMGN-1:1
4.0 lnc-HEMGN-1:1
4.1 lnc-HEMGN-1:1
5.0 lnc-HEMGN-1:1
5.1 lnc-ERP44-28:1
5.2 lnc-HEMGN-1:1