Transcript: lnc-HEPH-1:2

Basic information

LNCipedia transcript ID: lnc-HEPH-1:2 
LNCipedia gene ID: lnc-HEPH-1
Ensembl Gene ID: ENSG00000274536
Ensembl Transcript ID: ENST00000621933
Location (hg19): chrX:65235303-65240264
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1815 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538676; NONHSAT137355; ENST00000621933.1
Alternative gene names: ENSG00000256910; AL034397.1; ENSG00000274536.4; RP6-159A1.4; ENSG00000274536.5; MIR223; ENSG00000274536.6; AL034397.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.9978 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HEPH-1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HEPH-1:1
3.1 lnc-HEPH-1:2
4.0 lnc-HEPH-1:2
4.1 lnc-HEPH-1:2
5.0 lnc-HEPH-1:2
5.1 lnc-CXorf49B-55:1
5.2 lnc-HEPH-1:2