Transcript: lnc-HERC5-3:2

Basic information

LNCipedia transcript ID: lnc-HERC5-3:2 
LNCipedia gene ID: lnc-HERC5-3
Location (hg19): chr4:89424999-89481694
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1911 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_2683_chr4:89424998-89471592_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.0355 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HERC5-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HERC3-3:1
4.0 lnc-HERC3-3:1
4.1 lnc-HERC3-3:1
5.0 lnc-HERC3-3:1
5.1 lnc-HERC5-3:1
5.2 lnc-HERC5-3:2