Transcript: lnc-HERC6-1:2

Basic information

LNCipedia transcript ID: lnc-HERC6-1:2 
LNCipedia gene ID: lnc-HERC6-1
Location (hg19): chr4:89282583-89283291
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008836; NONHSAT097354
Alternative gene names: XLOC_003604; linc-HERC6-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7937 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HERC6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HERC6-1:2
3.1 lnc-HERC6-1:2
4.0 lnc-HERC6-1:2
4.1 lnc-HERC6-1:2
5.0 lnc-HERC6-1:2
5.1 lnc-HERC6-1:2
5.2 lnc-HERC6-1:2