Transcript: lnc-HES1-2:9

Basic information

LNCipedia transcript ID: lnc-HES1-2:9 
LNCipedia gene ID: lnc-HES1-2
Ensembl Gene ID: ENSG00000276407
Ensembl Transcript ID: ENST00000615240
Location (hg19): chr3:193788028-193798232
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000615240.1
Alternative gene names: ENSG00000276407.4; RP11-407B7.3; AC024559.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -200.6567 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HES1-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HES1-2:9
4.1 lnc-HES1-2:9
5.0 lnc-HES1-2:9
5.1 lnc-MUC20-37:6
5.2 lnc-HES1-2:9