Transcript: lnc-HES6-1:5

Basic information

LNCipedia transcript ID: lnc-HES6-1:5 
LNCipedia gene ID: lnc-HES6-1
Ensembl Gene ID: ENSG00000186235
Ensembl Transcript ID: ENST00000475669
Location (hg19): chr2:239133193-239140226
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 689 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT077683; ENST00000475669.5
Alternative gene names: ENSG00000186235.10; AC016757.3; AC016757.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.0075 non-coding 
CPAT coding probability 12.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HES6-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016757.3.1-1:4
4.0 lnc-AC016757.3.1-1:4
4.1 lnc-AC016757.3.1-1:4
5.0 lnc-AC016757.3.1-1:4
5.1 lnc-ASB18-33:5
5.2 lnc-HES6-1:5