Transcript: lnc-HEY1-1:2

Basic information

LNCipedia transcript ID: lnc-HEY1-1:2 
LNCipedia gene ID: lnc-HEY1-1
Ensembl Gene ID: ENSG00000249328
Ensembl Transcript ID: ENST00000502766
RefSeq ID: NR_110954
Location (hg19): chr8:80681607-80783972
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2126 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000502766; ENST00000502766.2; RP11-26J3.1-001; OTTHUMT00000379270.1; NONHSAT127385; NR_110954.1
Alternative gene names: ENSG00000249328; RP11-26J3.1; ENSG00000249328.2; OTTHUMG00000164566.2; AC036214.1; LOC101927040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0225 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HEY1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS28-1:2
3.1 lnc-HEY1-1:2
4.0 lnc-HEY1-1:2
4.1 lnc-HEY1-1:2
5.0 lnc-HEY1-1:2
5.1 lnc-CPA6-129:6
5.2 lnc-HEY1-1:2