Transcript: lnc-HIST1H2AA-2:1

Basic information

LNCipedia transcript ID: lnc-HIST1H2AA-2:1 
LNCipedia gene ID: lnc-HIST1H2AA-2
Location (hg19): chr6:25700994-25701553
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 560 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ncRnaDb_ncrna_FR361796_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.4885 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H2AA-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST1H2AA-2:1
4.0 lnc-HIST1H2AA-2:1
4.1 lnc-HIST1H2AA-2:1
5.0 lnc-HIST1H2AA-2:1
5.1 lnc-C6orf62-28:1
5.2 lnc-HIST1H2AA-2:1