Transcript: lnc-HIST2H3A-1:1

Basic information

LNCipedia transcript ID: lnc-HIST2H3A-1:1 
LNCipedia gene ID: lnc-HIST2H3A-1
Ensembl Gene ID: ENSG00000264207
Ensembl Transcript ID: ENST00000577853
Location (hg19): chr1:149832837-149834070
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1234 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577853.1
Alternative gene names: ENSG00000264207.1; RP11-196G18.23; AC239868.3; AC239868.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.4301 non-coding 
CPAT coding probability 18.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST2H3A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HIST2H3A-1:1
4.1 lnc-HIST2H3A-1:1
5.0 lnc-HIST2H3A-1:1
5.1 lnc-HIST2H3A-1:1
5.2 lnc-HIST2H3A-1:1