Transcript: lnc-HIVEP1-2:1

Basic information

LNCipedia transcript ID: lnc-HIVEP1-2:1 
LNCipedia gene ID: lnc-HIVEP1-2
Location (hg19): chr6:11934223-11960842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 659 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011693; NONHSAT107771
Alternative gene names: XLOC_005173; linc-HIVEP1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5486 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIVEP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIVEP1-2:1
3.1 lnc-HIVEP1-2:1
4.0 lnc-HIVEP1-2:1
4.1 lnc-HIVEP1-2:1
5.0 lnc-HIVEP1-2:1
5.1 lnc-PRPF4B-132:1
5.2 lnc-HIVEP1-2:1