Transcript: lnc-HIVEP1-4:4

Basic information

LNCipedia transcript ID: lnc-HIVEP1-4:4 
LNCipedia gene ID: lnc-HIVEP1-4
Location (hg19): chr6:11810403-11861791
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2628 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234427.1|MICT00000297518.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.3446 non-coding 
CPAT coding probability 35.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIVEP1-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HIVEP1-4:4
5.0 lnc-HIVEP1-4:4
5.1 lnc-PRPF4B-129:3
5.2 lnc-HIVEP1-4:4