Transcript: lnc-HIVEP2-5:1

Basic information

LNCipedia transcript ID: lnc-HIVEP2-5:1 
LNCipedia gene ID: lnc-HIVEP2-5
Ensembl Gene ID: ENSG00000236366
Ensembl Transcript ID: ENST00000447311
RefSeq ID: NR_027312
Location (hg19): chr6:142847592-142959026
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2293 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011141; ENST00000447311; ENST00000447311.1; RP11-440G9.1-001; OTTHUMT00000042494.1; NONHSAT115316; NR_027312; NR_027312.1
Alternative gene names: XLOC_005862; linc-NMBR-1; ENSG00000236366; RP11-440G9.1; ENSG00000236366.1; OTTHUMG00000015712.1; ENSG00000236366.2; AL359313.1; LOC153910


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2763 non-coding 
CPAT coding probability 18.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIVEP2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIVEP2-2:1
3.1 lnc-HIVEP2-5:1
4.0 lnc-HIVEP2-5:1
4.1 lnc-HIVEP2-5:1
5.0 lnc-HIVEP2-5:1
5.1 lnc-HIVEP2-5:1
5.2 lnc-HIVEP2-5:1