Transcript: lnc-HJURP-1:1

Basic information

LNCipedia transcript ID: lnc-HJURP-1:1 
LNCipedia gene ID: lnc-HJURP-1
Ensembl Gene ID: ENSG00000237581
Ensembl Transcript ID: ENST00000455991
Location (hg19): chr2:234854790-234864079
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 594 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455991.1; AC005538.5-001; OTTHUMT00000131004.1; NONHSAT077521
Alternative gene names: ENSG00000237581.1; AC005538.5; OTTHUMG00000059128.1; AC005538.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.9359 non-coding 
CPAT coding probability 46.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HJURP-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HJURP-1:1
4.0 lnc-HJURP-1:1
4.1 lnc-HJURP-1:1
5.0 lnc-HJURP-1:1
5.1 lnc-GBX2-20:1
5.2 lnc-HJURP-1:1