Transcript: lnc-HLA-B-2:10

Basic information

LNCipedia transcript ID: lnc-HLA-B-2:10 
LNCipedia gene ID: lnc-HLA-B-2
Ensembl Gene ID: ENSG00000272501
Ensembl Transcript ID: ENST00000606367
Location (hg19): chr6:31162977-31165814
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2838 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606367.1
Alternative gene names: ENSG00000272501.1; XXbac-BPG299F13.17; AL662844.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 81.5787 coding 
CPAT coding probability 20.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HLA-B-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POU5F1-10:1
4.0 lnc-POU5F1-10:1
4.1 lnc-HLA-B-2:10
5.0 lnc-HLA-B-2:10
5.1 lnc-PSORS1C2-12:10
5.2 lnc-HLA-B-2:10