Transcript: lnc-HLA-DQA2-1:1

Basic information

LNCipedia transcript ID: lnc-HLA-DQA2-1:1 
LNCipedia gene ID: lnc-HLA-DQA2-1
Location (hg19): chr6:32685782-32686604
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00011291; ENST00000448198; ENST00000448198.1; XXbac-BPG254F23.7-001; OTTHUMT00000276168.1; NONHSAT108927
Alternative gene names: XLOC_005258; linc-HLA-DQA2; ENSG00000232080; XXbac-BPG254F23.7; ENSG00000232080.1; OTTHUMG00000140119.1; ENSG00000232080.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.5907 non-coding 
CPAT coding probability 17.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DQA2-1:1 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HLA-DQA2-1:1
3.1 lnc-HLA-DQA2-1:1
4.0 lnc-HLA-DQA2-1:1
4.1 lnc-HLA-DQA2-1:1
5.0 lnc-HLA-DQA2-1:1
5.1 lnc-TNF-73:1
5.2 lnc-HLA-DQA2-1:1