Transcript: lnc-HLA-DQA2-1:4

Basic information

LNCipedia transcript ID: lnc-HLA-DQA2-1:4 
LNCipedia gene ID: lnc-HLA-DQA2-1
Location (hg19): chr6:32685806-32686604
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 799 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT108928; ENST00000585372.1
Alternative gene names: ENSG00000232080.3; XXbac-BPG254F23.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.5907 non-coding 
CPAT coding probability 15.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DQA2-1:4 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HLA-DQA2-1:4
4.0 lnc-HLA-DQA2-1:4
4.1 lnc-HLA-DQA2-1:4
5.0 lnc-HLA-DQA2-1:4
5.1 lnc-TNF-73:3
5.2 lnc-HLA-DQA2-1:4