Transcript: lnc-HMBOX1-9:1

Basic information

LNCipedia transcript ID: lnc-HMBOX1-9:1 
LNCipedia gene ID: lnc-HMBOX1-9
Location (hg19): chr8:28968485-28969254
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 770 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr8_1878_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.3194 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMBOX1-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMBOX1-9:1
4.0 lnc-HMBOX1-9:1
4.1 lnc-HMBOX1-9:1
5.0 lnc-HMBOX1-9:1
5.1 lnc-WRN-41:1
5.2 lnc-HMBOX1-9:1